Tools & Packages

Lab-built tools and pipelines, ordered by first release date.

Pipeline Public

Cancer_mtDNAcn

Analysis workflow for estimating mitochondrial DNA copy number (mtDNAcn) from cancer sequencing data and relating it to tumour type, stage, and expression profiles.

• Source GitHub repository
• Maintainer Riddhiman Dhar/ Anamika Acharyya
• First Release No GitHub release published
• First Activity To be determined (check repository)

Repository README

Pipeline Public

GRN_LUAD

Gene regulatory network analysis workflow for lung adenocarcinoma (LUAD) patient data.

• Source GitHub repository
• Maintainer Riddhiman Dhar/ Upasana Ray
• First Release No GitHub release published
• First Activity May 2025 (public repository timeline)

Repository README

Pipeline Public

CancerNoiseAnalysis

Multi-step single-cell analysis workflow for cancer expression-noise studies, including adjusted noise calculation, stage-wise increasing-noise trend analysis, and sample-specific highly noisy gene analysis.

• Source GitHub repository
• Maintainer SIMBIOS Lab (sbliitkgp)
• First Release No GitHub release published
• First Activity October 2023 (public repository timeline)

Repository README

Package Public

TranslationModNoise

Analysis tool for studying translation-related noise and modifications in gene expression systems.

• Source GitHub repository
• Maintainer Riddhiman Dhar
• First Release No GitHub release published
• First Activity To be determined (check repository)

Repository README